rawrr

This is the released version of rawrr; for the devel version, see rawrr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Direct Access to Orbitrap Data and Beyond

Bioconductor version: Release (3.23)

This package wraps the functionality of the Thermo Fisher Scientic RawFileReader .NET 8.0 assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

Author: Christian Panse [aut, cre] ORCID: 0000-0003-1975-3064 , Leonardo Schwarz [ctb] ORCID: 0009-0003-1828-6924 , Tobias Kockmann [aut] ORCID: 0000-0002-1847-885X

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Christian Panse, Tobias Kockmann. rawrr: Direct Access to Orbitrap Data and Beyond. doi:10.18129/B9.bioc.rawrr, R package version 1.20.0, https://bioconductor.org/packages/rawrr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")

Direct Access to Orbitrap Data and Beyond	HTML	R Script
Reference Manual	PDF
NEWS	Text
INSTALL	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.20.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	GPL-3
Depends	R (>= 4.5)
Imports	grDevices, graphics, stats, utils
System Requirements	.NET 8.0 (optional; required only if you want to compile and link the C# code)
URL	https://github.com/fgcz/rawrr/
Bug Reports	https://github.com/fgcz/rawrr/issues

Suggests	BiocStyle (>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare (>= 1.5), testthat
Linking To
Enhances
Depends On Me
Imports Me	MsBackendRawFileReader, rawDiag
Suggests Me	lcmsPlot
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rawrr_1.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	rawrr_1.20.0.tgz
macOS Binary (sonoma-arm64)	rawrr_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rawrr
Package Short Url	https://bioconductor.org/packages/rawrr/
Package Downloads Report	Download Stats