CTdata
Data companion to CTexploreR
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CTdata")Details
| Maintainer | Laurent Gatto <laurent.gatto@uclouvain.be> |
| Author | Axelle Loriot [aut] (ORCID: <https://orcid.org/0000-0002-5288-8561>), Julie Devis [aut] (ORCID: <https://orcid.org/0000-0001-5525-5666>), Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>) |
| License | Artistic-2.0 |
| Bug Reports | https://github.com/UCLouvain-CBIO/CTdata/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/CTdata/ |
Citation
From within R, enter citation("CTdata"):
Axelle Loriot, Julie Devis, Laurent Gatto. CTdata: Data companion to CTexploreR. doi:10.18129/B9.bioc.CTdata, R package version 1.12.0, https://bioconductor.org/packages/CTdata.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CTdata_1.12.0.tar.gz |
| Windows binary (x86_64) | CTdata_1.12.0.zip |
| macOS binary (arm64) | CTdata_1.12.0.tgz |
| macOS binary (x86_64) | CTdata_1.12.0.tgz |
Dependencies
Depends: R (>= 4.2)
Imports: ExperimentHub, utils
Suggests: testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment
Reverse dependencies
Depends On Me (1): CTexploreR