CLLmethylation

DOI: 10.18129/B9.bioc.CLLmethylation    

Methylation data of primary CLL samples in PACE project

Bioconductor version: Release (3.7)

The package includes DNA methylation data for the primary Chronic Lymphocytic Leukemia samples included in the Primary Blood Cancer Encyclopedia (PACE) project. Raw data from the 450k DNA methylation arrays is stored in the European Genome-Phenome Archive (EGA) under accession number EGAS0000100174. For more information concerning the project please refer to the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) and R/Bioconductor package BloodCancerMultiOmics2017.

Author: Malgorzata Oles, Andreas Mock

Maintainer: Malgorzata Oles <malgorzata.oles at embl.de>, Andreas Mock <andreas.mock at embl.de>

Citation (from within R, enter citation("CLLmethylation")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CLLmethylation")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CLLmethylation")

 

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Details

biocViews CancerData, DiseaseModel, ExperimentData, LeukemiaCancerData
Version 1.0.0
License LGPL
Depends R (>= 3.5.0)
Imports SummarizedExperiment, ExperimentHub
LinkingTo
Suggests BiocStyle, ggplot2, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Source Package CLLmethylation_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/CLLmethylation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CLLmethylation
Package Short Url http://bioconductor.org/packages/CLLmethylation/
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