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m6Aboost

m6Aboost


Bioconductor version: Release (3.18)

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Author: You Zhou [aut, cre] , Kathi Zarnack [aut]

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("m6Aboost")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("m6Aboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("m6Aboost")
m6Aboost Vignettes HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License Artistic-2.0
Depends S4Vectors, adabag, GenomicRanges, R (>= 4.1)
Imports dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub
System Requirements
URL https://github.com/ZarnackGroup/m6Aboost
Bug Reports https://github.com/ZarnackGroup/m6Aboost/issues
See More
Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
Linking To
Enhances
Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package m6Aboost_1.8.0.tar.gz
Windows Binary m6Aboost_1.8.0.zip
macOS Binary (x86_64) m6Aboost_1.8.0.tgz
macOS Binary (arm64) m6Aboost_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/m6Aboost
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/m6Aboost
Bioc Package Browser https://code.bioconductor.org/browse/m6Aboost/
Package Short Url https://bioconductor.org/packages/m6Aboost/
Package Downloads Report Download Stats