GSE159526
Placental cell DNA methylation data from GEO accession GSE159526
Bioconductor version: 3.23 · Package version: 1.18.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
19 term and 9 first trimester placental chorionic villi and matched cell-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession [GSE159526](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159526). Both the raw and processed data has been made available on \code{ExperimentHub}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \code{matrix}, with a corresponding phenotype information as a \code{data.frame} object.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSE159526")Details
| Maintainer | Victor Yuan <victor.2wy@gmail.com> |
| Author | Victor Yuan [aut, cre] (ORCID: <https://orcid.org/0000-0002-3394-998X>) |
| License | MIT + file LICENSE |
| URL | https://github.com/wvictor14/GSE159526 |
| Bug Reports | https://github.com/wvictor14/GSE159526/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, GEO, Genome, Homo_sapiens_Data, MethylationArrayData, Tissue |
| Package Short Url | https://bioconductor.org/packages/GSE159526/ |
Citation
From within R, enter citation("GSE159526"):
Victor Yuan. GSE159526: Placental cell DNA methylation data from GEO accession GSE159526. doi:10.18129/B9.bioc.GSE159526, R package version 1.18.0, https://bioconductor.org/packages/GSE159526.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | GSE159526_1.18.0.tar.gz |
Dependencies
Suggests: ExperimentHub, BiocStyle, RefManageR, knitr, rmarkdown, testthat, minfi, tibble, sessioninfo