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TENxVisiumData

Visium spatial gene expression data by 10X Genomics


Bioconductor version: Release (3.18)

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena at crowell.eu>

Citation (from within R, enter citation("TENxVisiumData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxVisiumData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxVisiumData")
TENxVisiumData HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch
Version 1.10.0
License MIT + file LICENSE
Depends ExperimentHub, SpatialExperiment
Imports utils
System Requirements
URL https://github.com/helenalc/TENxVisiumData
Bug Reports https://github.com/helenalc/TENxVisiumData/issues
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Suggests BiocStyle, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxVisiumData_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TENxVisiumData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxVisiumData
Package Short Url https://bioconductor.org/packages/TENxVisiumData/
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