HighlyReplicatedRNASeq

DOI: 10.18129/B9.bioc.HighlyReplicatedRNASeq    

Collection of Bulk RNA-Seq Experiments With Many Replicates

Bioconductor version: Release (3.12)

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("HighlyReplicatedRNASeq")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HighlyReplicatedRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HighlyReplicatedRNASeq")

 

HTML R Script Exploring the 86 bulk RNA-seq samples from the Schurch et al. (2016) study
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.2.0
License MIT + file LICENSE
Depends SummarizedExperiment, ExperimentHub
Imports S4Vectors
LinkingTo
Suggests BiocStyle, BiocFileCache, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/const-ae/HighlyReplicatedRNASeq
BugReports https://github.com/const-ae/HighlyReplicatedRNASeq/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HighlyReplicatedRNASeq_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/HighlyReplicatedRNASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HighlyReplicatedRNASeq
Package Short Url https://bioconductor.org/packages/HighlyReplicatedRNASeq/
Package Downloads Report Download Stats

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