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Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Bioconductor version: Release (3.19)

Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).

Author: Christopher Dampier [aut, cre] , Bioconductor Package Maintainer [ctb]

Maintainer: Christopher Dampier <chd5n at>

Citation (from within R, enter citation("FieldEffectCrc")):


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SummarizedExperiments of colorectal transcriptomes HTML R Script
Reference Manual PDF


biocViews ColonCancerData, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, ReproducibleResearch, SequencingData, Tissue
Version 1.14.0
License Artistic-2.0
Depends utils
Imports BiocStyle, RUnit, SummarizedExperiment, ExperimentHub(>= 0.99.6), AnnotationHub, DESeq2
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Suggests knitr, rmarkdown, BiocGenerics, sva, BiocManager
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Source Package FieldEffectCrc_1.14.0.tar.gz
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