scpdata
Single-Cell Proteomics Data Package
Bioconductor version: 3.23 · Package version: 1.20.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scpdata")Details
| Maintainer | Christophe Vanderaa <vanderaa.christophe@gmail.com> |
| Author | Christophe Vanderaa [aut, cre] (ORCID: <https://orcid.org/0000-0001-7443-5427>), Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Enes Ayar [dtc] (ORCID: <https://orcid.org/0000-0001-8881-9800>), Samuel Grégoire [dtc] (ORCID: <https://orcid.org/0000-0002-0900-7677>) |
| License | GPL-2 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData |
| Package Short Url | https://bioconductor.org/packages/scpdata/ |
Citation
From within R, enter citation("scpdata"):
Christophe Vanderaa, Laurent Gatto. scpdata: Single-Cell Proteomics Data Package. doi:10.18129/B9.bioc.scpdata, R package version 1.20.0, https://bioconductor.org/packages/scpdata.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | scpdata_1.20.0.tar.gz |
Dependencies
Depends: R (>= 4.2.0), QFeatures, ExperimentHub
Imports: utils, AnnotationHub, SingleCellExperiment, S4Vectors
Suggests: scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
Reverse dependencies
Suggests Me (1): scp