MACSr

This is the released version of MACSr; for the devel version, see MACSr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

MACS: Model-based Analysis for ChIP-Seq

Bioconductor version: Release (3.23)

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Author: Philippa Doherty [aut], Qiang Hu [aut, cre]

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>

Citation (from within R, enter citation("MACSr")):

Philippa Doherty, Qiang Hu. MACSr: MACS: Model-based Analysis for ChIP-Seq. doi:10.18129/B9.bioc.MACSr, R package version 1.20.0, https://bioconductor.org/packages/MACSr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MACSr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSr")

MACSr	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ATACSeq, ChIPSeq, ImmunoOncology, Software
Version	1.20.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	BSD_3_clause + file LICENSE
Depends	R (>= 4.1.0)
Imports	utils, reticulate, S4Vectors, methods, basilisk, ExperimentHub, AnnotationHub
System Requirements
URL

Suggests	testthat, knitr, rmarkdown, BiocStyle, MACSdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MACSr_1.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	MACSr_1.20.0.tgz
macOS Binary (sonoma-arm64)	MACSr_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MACSr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MACSr
Package Short Url	https://bioconductor.org/packages/MACSr/
Package Downloads Report	Download Stats