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Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Bioconductor version: Release (3.18)

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at>

Citation (from within R, enter citation("MouseGastrulationData")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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Available datasets HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData
Version 1.16.0
License GPL-3
Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix
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Depends On Me OSCA.multisample
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Source Package MouseGastrulationData_1.16.0.tar.gz
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