STexampleData
Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format
Bioconductor version: 3.23 · Package version: 1.20.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("STexampleData")Details
| Maintainer | Lukas M. Weber <weberlm3@gmail.com> |
| Author | Lukas M. Weber [aut, cre] (ORCID: <https://orcid.org/0000-0002-3282-1730>), Yixing E. Dong [aut] (ORCID: <https://orcid.org/0009-0003-5115-5686>) |
| License | MIT + file LICENSE |
| URL | https://github.com/lmweber/STexampleData |
| Bug Reports | https://github.com/lmweber/STexampleData/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData |
| Package Short Url | https://bioconductor.org/packages/STexampleData/ |
Citation
From within R, enter citation("STexampleData"):
Lukas M. Weber, Yixing E. Dong. STexampleData: Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format. doi:10.18129/B9.bioc.STexampleData, R package version 1.20.1, https://bioconductor.org/packages/STexampleData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | STexampleData_1.20.1.tar.gz |
Dependencies
Depends: ExperimentHub, SingleCellExperiment, SpatialExperiment
Imports: utils
Suggests: BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array
Reverse dependencies
Suggests Me (13): Battlefield, BulkSignalR, escheR, ggsc, ggspavis, nnSVG, poem, smoothclust, spatialSimGP, spoon, SpotSweeper, SVP, tpSVG