GenomicDistributionsData
Reference data for GenomicDistributions package
Bioconductor version: 3.23 · Package version: 1.20.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicDistributionsData")Details
| Maintainer | Kristyna Kupkova <kristynakupkova@gmail.com> |
| Author | Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb] |
| License | BSD_2_clause + file LICENSE |
| Bug Reports | http://github.com/databio/GenomicDistributionsData |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, Genome |
| Package Short Url | https://bioconductor.org/packages/GenomicDistributionsData/ |
Citation
From within R, enter citation("GenomicDistributionsData"):
Michal Stolarczyk, Kristyna Kupkova, Jose Verdezoto. GenomicDistributionsData: Reference data for GenomicDistributions package. doi:10.18129/B9.bioc.GenomicDistributionsData, R package version 1.20.0, https://bioconductor.org/packages/GenomicDistributionsData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicDistributionsData_1.20.0.tar.gz |
Dependencies
Depends: R (>= 4.1)
Imports: ExperimentHub (>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb
Reverse dependencies
Suggests Me (1): GenomicDistributions