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BioImageDbs

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)


Bioconductor version: Release (3.19)

The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.

Author: Satoshi Kume [aut, cre] , Kozo Nishida [aut]

Maintainer: Satoshi Kume <satoshi.kume.1984 at gmail.com>

Citation (from within R, enter citation("BioImageDbs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioImageDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioImageDbs")
Providing Bioimage Dataset for ExperimentHub HTML R Script
The BioImageBbs Datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellCulture, ExperimentData, ExperimentHub, Tissue
Version 1.12.0
License Artistic-2.0
Depends R (>= 4.1.0)
Imports ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum
System Requirements
URL https://kumes.github.io/BioImageDbs/
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Suggests knitr, BiocStyle, purrr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioImageDbs_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BioImageDbs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioImageDbs
Package Short Url https://bioconductor.org/packages/BioImageDbs/
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