MsBackendRawFileReader

DOI: 10.18129/B9.bioc.MsBackendRawFileReader    

Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

Bioconductor version: Release (3.14)

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package (Kockmann T. et al. (2020) ) Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("MsBackendRawFileReader")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendRawFileReader")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendRawFileReader")

 

HTML R Script On Using and Extending the `MsBackendRawFileReader` Backend.
PDF   Reference Manual
Text   NEWS
Text   INSTALL

Details

biocViews MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License GPL-3
Depends R (>= 4.1), methods, Spectra(>= 1.2)
Imports MsCoreUtils, S4Vectors, IRanges, rawrr(>= 1.1.14), utils, BiocParallel
LinkingTo
Suggests BiocStyle(>= 2.5), ExperimentHub, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
SystemRequirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
Enhances
URL https://github.com/fgcz/MsBackendRawFileReader
BugReports https://github.com/fgcz/MsBackendRawFileReader/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendRawFileReader_1.0.0.tar.gz
Windows Binary MsBackendRawFileReader_1.0.0.zip
macOS 10.13 (High Sierra) MsBackendRawFileReader_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsBackendRawFileReader
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendRawFileReader
Package Short Url https://bioconductor.org/packages/MsBackendRawFileReader/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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