TransOmicsData
A collection of trans-omics datasets across various biological systems
Bioconductor version: Release (3.19)
Contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.
Author: Carissa Chen [aut] , Di Xiao [aut, cre] , Pengyi Yang [aut]
Maintainer: Di Xiao <d.xiao at sydney.edu.au>
citation("TransOmicsData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TransOmicsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TransOmicsData")
TransOmicsData: A collection of trans-omics datasets across various biological systems | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ChIPSeqData, ExperimentData, ExperimentHub, MassSpectrometryData, RNASeqData, SequencingData, Tissue |
Version | 1.0.1 |
License | GPL-3 + file LICENSE |
Depends | |
Imports | S4Vectors, utils |
System Requirements | |
URL | https://github.com/PYangLab/TransOmicsData |
Bug Reports | https://support.bioconductor.org/t/TransOmicsData |
See More
Suggests | BiocStyle, knitr, rmarkdown, RefManageR, sessioninfo, testthat, ExperimentHub |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TransOmicsData_1.0.1.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/TransOmicsData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TransOmicsData |
Package Short Url | https://bioconductor.org/packages/TransOmicsData/ |
Package Downloads Report | Download Stats |