TransOmicsData

A collection of trans-omics datasets across various biological systems


Bioconductor version: Release (3.19)

Contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.

Author: Carissa Chen [aut] , Di Xiao [aut, cre] , Pengyi Yang [aut]

Maintainer: Di Xiao <d.xiao at sydney.edu.au>

Citation (from within R, enter citation("TransOmicsData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TransOmicsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransOmicsData")
TransOmicsData: A collection of trans-omics datasets across various biological systems HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ChIPSeqData, ExperimentData, ExperimentHub, MassSpectrometryData, RNASeqData, SequencingData, Tissue
Version 1.0.1
License GPL-3 + file LICENSE
Depends
Imports S4Vectors, utils
System Requirements
URL https://github.com/PYangLab/TransOmicsData
Bug Reports https://support.bioconductor.org/t/TransOmicsData
See More
Suggests BiocStyle, knitr, rmarkdown, RefManageR, sessioninfo, testthat, ExperimentHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TransOmicsData_1.0.1.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TransOmicsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransOmicsData
Package Short Url https://bioconductor.org/packages/TransOmicsData/
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