TabulaMurisSenisData
Bulk and single-cell RNA-seq data from the Tabula Muris Senis project
Bioconductor version: 3.23 · Package version: 1.18.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TabulaMurisSenisData")Details
| Maintainer | Charlotte Soneson <charlottesoneson@gmail.com> |
| Author | Charlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Dania Machlab [aut] (ORCID: <https://orcid.org/0000-0002-2578-6930>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Stefania Astrologo [aut] (ORCID: <https://orcid.org/0000-0002-4845-2802>) |
| License | MIT + file LICENSE |
| URL | https://github.com/fmicompbio/TabulaMurisSenisData |
| Bug Reports | https://github.com/fmicompbio/TabulaMurisSenisData/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, RNASeqData, SingleCellData |
| Package Short Url | https://bioconductor.org/packages/TabulaMurisSenisData/ |
Citation
From within R, enter citation("TabulaMurisSenisData"):
Charlotte Soneson, Dania Machlab, Federico Marini, Stefania Astrologo. TabulaMurisSenisData: Bulk and single-cell RNA-seq data from the Tabula Muris Senis project. doi:10.18129/B9.bioc.TabulaMurisSenisData, R package version 1.18.0, https://bioconductor.org/packages/TabulaMurisSenisData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | TabulaMurisSenisData_1.18.0.tar.gz |
Dependencies
Imports: ExperimentHub, SingleCellExperiment, HDF5Array, SummarizedExperiment, gdata, AnnotationHub
Suggests: ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle