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SimBenchData

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics


Bioconductor version: Release (3.18)

The SimBenchData package contains a total of 35 single-cell RNA-seq datasets covering a wide range of data characteristics, including major sequencing protocols, multiple tissue types, and both human and mouse sources.

Author: Yue Cao [aut, cre], Pengyi Yang [aut], Jean Yee Hwa Yang [aut]

Maintainer: Yue Cao <ycao6928 at uni.sydney.edu.au>

Citation (from within R, enter citation("SimBenchData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SimBenchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SimBenchData")
SimBenchData: a collection of single-cell RNA-seq data covering a wide range of data characteristics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, RNASeqData, SequencingData, SingleCellData, Tissue
Version 1.10.0
License GPL-3
Depends ExperimentHub
Imports S4Vectors, utils
System Requirements
URL
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Suggests BiocStyle, knitr, rmarkdown, Seurat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SimBenchData_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SimBenchData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SimBenchData
Package Short Url https://bioconductor.org/packages/SimBenchData/
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