Welcome to the new bioconductor.org!

cfToolsData

ExperimentHub data for the cfTools package


Bioconductor version: Release (3.18)

The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.

Author: Ran Hu [aut, cre] , Shuo Li [aut] , Xianghong Jasmine Zhou [aut] , Wenyuan Li [aut]

Maintainer: Ran Hu <huran at ucla.edu>

Citation (from within R, enter citation("cfToolsData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cfToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cfToolsData")
cfToolsData HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CancerData, DiseaseModel, ExperimentData, ExperimentHub, ReproducibleResearch, Tissue
Version 1.0.0
License file LICENSE
Depends R (>= 4.3.0)
Imports utils, ExperimentHub
System Requirements
URL https://github.com/jasminezhoulab/cfToolsData
Bug Reports https://github.com/jasminezhoulab/cfToolsData/issues
See More
Suggests BiocStyle, knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me cfTools
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cfToolsData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/cfToolsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cfToolsData
Package Short Url https://bioconductor.org/packages/cfToolsData/
Package Downloads Report Download Stats