curatedAdipoChIP

This is the released version of curatedAdipoChIP; for the devel version, see curatedAdipoChIP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: Release (3.23)

A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre] ORCID: 0000-0002-4377-6541

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoChIP")):

Mahmoud Ahmed. curatedAdipoChIP: A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1). doi:10.18129/B9.bioc.curatedAdipoChIP, R package version 1.28.0, https://bioconductor.org/packages/curatedAdipoChIP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedAdipoChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoChIP")

Using curatedAdipoChIP	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData
Version	1.28.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	GPL-3
Depends	R (>= 3.6), SummarizedExperiment, ExperimentHub
Imports
System Requirements
URL	https://github.com/MahShaaban/curatedAdipoChIP
Bug Reports	https://github.com/MahShaaban/curatedAdipoChIP/issues

Suggests	knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedAdipoChIP_1.28.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/curatedAdipoChIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedAdipoChIP
Package Short Url	https://bioconductor.org/packages/curatedAdipoChIP/
Package Downloads Report	Download Stats