HiContactsData
HiContacts companion data package
Bioconductor version: 3.23 · Package version: 1.14.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HiContactsData")Details
| Maintainer | Jacques Serizay <jacquesserizay@gmail.com> |
| Author | Jacques Serizay [aut, cre] |
| License | MIT + file LICENSE |
| URL | https://github.com/js2264/HiContactsData |
| Bug Reports | https://github.com/js2264/HiContactsData/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, SequencingData |
| Package Short Url | https://bioconductor.org/packages/HiContactsData/ |
Citation
From within R, enter citation("HiContactsData"):
Jacques Serizay. HiContactsData: HiContacts companion data package. doi:10.18129/B9.bioc.HiContactsData, R package version 1.14.0, https://bioconductor.org/packages/HiContactsData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | HiContactsData_1.14.0.tar.gz |
Reverse dependencies
Suggests Me (5): HiCExperiment, HiContacts, HiCool, HiSpaR, plyinteractions