chipseqDBData
Data for the chipseqDB Workflow
Bioconductor version: Release (3.19)
Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
Citation (from within R, enter
citation("chipseqDBData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chipseqDBData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chipseqDBData")
File manifest and statistics | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ChIPSeqData, ExperimentData, ExperimentHub, SequencingData |
Version | 1.20.0 |
License | CC BY 4.0 |
Depends | |
Imports | AnnotationHub, ExperimentHub, Rsamtools, S4Vectors |
System Requirements | |
URL |
See More
Suggests | knitr, BiocStyle, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | csawBook |
Imports Me | |
Suggests Me | chipseqDB |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | chipseqDBData_1.20.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/chipseqDBData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chipseqDBData |
Package Short Url | https://bioconductor.org/packages/chipseqDBData/ |
Package Downloads Report | Download Stats |