planet
Placental DNA methylation analysis tools
Bioconductor version: 3.23 · Package version: 1.20.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("planet")Details
| Maintainer | Victor Yuan <victor.2wy@gmail.com> |
| Author | Victor Yuan [aut, cre], Wendy P. Robinson [aut, ctb], Icíar Fernández-Boyano [aut, ctb] |
| License | GPL-2 |
| URL | http://github.com/wvictor14/planet, http://victoryuan.com/planet/ |
| Bug Reports | http://github.com/wvictor14/planet/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software |
| Package Short Url | https://bioconductor.org/packages/planet/ |
Citation
From within R, enter citation("planet"):
Victor Yuan, Wendy P. Robinson, Icíar Fernández-Boyano. planet: Placental DNA methylation analysis tools. doi:10.18129/B9.bioc.planet, R package version 1.20.0, https://bioconductor.org/packages/planet.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | planet_1.20.0.tar.gz |
| Windows binary (x86_64) | planet_1.20.0.zip |
| macOS binary (arm64) | planet_1.20.0.tgz |
| macOS binary (x86_64) | planet_1.20.0.tgz |