scaeData

This is the released version of scaeData; for the devel version, see scaeData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19

Data Package for SingleCellAlleleExperiment

Bioconductor version: Release (3.23)

Contains default datasets used by the Bioconductor package SingleCellAlleleExperiment. The raw FASTQ files were sourced from publicly accessible datasets provided by 10x Genomics. Subsequently, our scIGD snakemake workflow was employed to process these FASTQ files. The resulting output from scIGD constitutes to the contents of this data package.

Author: Ahmad Al Ajami [aut, cre] ORCID: 0009-0006-5615-7447 , Jonas Schuck [aut] ORCID: 0009-0003-5705-4579 , Federico Marini [aut] ORCID: 0000-0003-3252-7758 , Katharina Imkeller [aut] ORCID: 0000-0002-5177-0852

Maintainer: Ahmad Al Ajami <alajami at med.uni-frankfurt.de>

Citation (from within R, enter citation("scaeData")):

Ahmad Al Ajami, Jonas Schuck, Federico Marini, Katharina Imkeller. scaeData: Data Package for SingleCellAlleleExperiment. doi:10.18129/B9.bioc.scaeData, R package version 1.8.0, https://bioconductor.org/packages/scaeData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scaeData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scaeData")

scaeData User Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, SingleCellData
Version	1.8.0
In Bioconductor since	BioC 3.19 (R-4.4) (2.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.4.0)
Imports	ExperimentHub
System Requirements
URL	https://github.com/AGImkeller/scaeData
Bug Reports	https://github.com/AGImkeller/scIGD/issues

Suggests	knitr, rmarkdown, markdown, SingleCellAlleleExperiment, Matrix, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	SingleCellAlleleExperiment
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scaeData_1.8.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/scaeData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scaeData
Package Short Url	https://bioconductor.org/packages/scaeData/
Package Downloads Report	Download Stats