To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiAssayExperiment")

In most cases, you don't need to download the package archive at all.

MultiAssayExperiment

 

Software for the integration of multi-omics experiments in Bioconductor

Bioconductor version: Release (3.5)

Develop an integrative environment where multiple assays are managed and preprocessed for genomic data analysis.

Author: MultiAssay SIG

Maintainer: Marcel Ramos <marcel.ramosperez at roswellpark.org>

Citation (from within R, enter citation("MultiAssayExperiment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiAssayExperiment")

Documentation

HTML R Script Coordinating Analysis of Multi-Assay Experiments
HTML R Script HDF5Array and MultiAssayExperiment
HTML R Script MultiAssayExperiment: Prostate Cancer Data
HTML R Script Quick-start Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.2.1
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports methods, GenomicRanges(>= 1.25.93), BiocGenerics, SummarizedExperiment(>= 1.3.81), S4Vectors, IRanges, Biobase, reshape2, shinydashboard, shiny, stats, tidyr, UpSetR, utils
LinkingTo
Suggests BiocStyle, testthat, knitr, GenomicFiles, HDF5Array, RaggedExperiment, rmarkdown
SystemRequirements
Enhances
URL https://github.com/waldronlab/MultiAssayExperiment/wiki/MultiAssayExperiment-API
BugReports https://github.com/waldronlab/MultiAssayExperiment/issues
Depends On Me yriMulti
Imports Me GOpro
Suggests Me MultiDataSet, RaggedExperiment
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MultiAssayExperiment_1.2.1.tar.gz
Windows Binary MultiAssayExperiment_1.2.1.zip
Mac OS X 10.11 (El Capitan) MultiAssayExperiment_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MultiAssayExperiment/tree/release-3.5
Package Short Url http://bioconductor.org/packages/MultiAssayExperiment/
Package Downloads Report Download Stats

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