AffiXcan

DOI: 10.18129/B9.bioc.AffiXcan    

A functional approach to impute Genetically Regulated Expression

Bioconductor version: Release (3.8)

Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.

Author: Alessandro Lussana [aut, cre]

Maintainer: Alessandro Lussana <alessandro.lussana at protonmail.com>

Citation (from within R, enter citation("AffiXcan")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("AffiXcan", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffiXcan")

 

HTML R Script AffiXcan
PDF   Reference Manual

Details

biocViews DimensionReduction, GeneExpression, GeneRegulation, Regression, Software, Transcription
Version 1.0.0
License GPL-3
Depends R (>= 3.5), SummarizedExperiment
Imports MultiAssayExperiment, BiocParallel
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AffiXcan_1.0.0.tar.gz
Windows Binary AffiXcan_1.0.0.zip
Mac OS X 10.11 (El Capitan) AffiXcan_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AffiXcan
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AffiXcan
Package Short Url http://bioconductor.org/packages/AffiXcan/
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