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Summarization and expression/phenotype association of CNV ranges

Bioconductor version: Release (3.19)

The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.

Author: Ludwig Geistlinger [aut, cre], Vinicius Henrique da Silva [aut], Marcel Ramos [ctb], Levi Waldron [ctb]

Maintainer: Ludwig Geistlinger <ludwig.geistlinger at>

Citation (from within R, enter citation("CNVRanger")):


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if (!require("BiocManager", quietly = TRUE))


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Summarization and quantitative trait analysis of CNV ranges HTML R Script
Reference Manual PDF


biocViews CopyNumberVariation, DifferentialExpression, GeneExpression, GenomeWideAssociation, GenomicVariation, Microarray, RNASeq, SNP, Software
Version 1.20.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends GenomicRanges, RaggedExperiment
Imports BiocGenerics, BiocParallel, GDSArray, GenomeInfoDb, IRanges, S4Vectors, SNPRelate, SummarizedExperiment, data.table, edgeR, gdsfmt, grDevices, lattice, limma, methods, plyr, qqman, rappdirs, reshape2, stats, utils
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Source Package CNVRanger_1.20.0.tar.gz
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macOS Binary (x86_64) CNVRanger_1.20.0.tgz
macOS Binary (arm64) CNVRanger_1.20.0.tgz
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