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metabolomicsWorkbenchR

This is the released version of metabolomicsWorkbenchR; for the devel version, see metabolomicsWorkbenchR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Metabolomics Workbench in R

DOI: 10.18129/B9.bioc.metabolomicsWorkbenchR

Bioconductor version: Release (3.23)

This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study, compound, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included.

Author: Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]

Maintainer: Gavin Rhys Lloyd <g.r.lloyd at bham.ac.uk>

Citation (from within R, enter citation("metabolomicsWorkbenchR")):

Gavin Rhys Lloyd, Ralf Johannes Maria Weber. metabolomicsWorkbenchR: Metabolomics Workbench in R. doi:10.18129/B9.bioc.metabolomicsWorkbenchR, R package version 1.22.0, https://bioconductor.org/packages/metabolomicsWorkbenchR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabolomicsWorkbenchR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabolomicsWorkbenchR")

Details

Package Archives

Follow Installation instructions to use this package in your R session.