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Multi-Omics data integration

Bioconductor version: Release (3.19)

gINTomics is an R package for Multi-Omics data integration and visualization. gINTomics is designed to detect the association between the expression of a target and of its regulators, taking into account also their genomics modifications such as Copy Number Variations (CNV) and methylation. What is more, gINTomics allows integration results visualization via a Shiny-based interactive app.

Author: Angelo Velle [cre, aut] , Francesco Patane' [aut] , Chiara Romualdi [aut]

Maintainer: Angelo Velle <angelo.velle at>

Citation (from within R, enter citation("gINTomics")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

gINTomics vignette HTML R Script
Reference Manual PDF


biocViews CopyNumberVariation, GeneExpression, GeneTarget, Microarray, RNASeq, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License AGPL-3
Depends R (>= 4.4.0)
Imports BiocParallel, biomaRt, OmnipathR, edgeR, ggplot2, ggridges, gtools, MultiAssayExperiment, plyr, stringi, stringr, SummarizedExperiment, methods, stats, reshape2, randomForest, limma,,, BiocGenerics, GenomicFeatures, ReactomePA, clusterProfiler, dplyr, AnnotationDbi, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, shiny, GenomicRanges, ggtree, shinydashboard, plotly, DT, MASS, InteractiveComplexHeatmap, ComplexHeatmap, visNetwork, shiny.gosling, ggvenn, RColorBrewer, utils, grDevices, callr, circlize
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Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
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Follow Installation instructions to use this package in your R session.

Source Package gINTomics_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64) gINTomics_1.0.0.tgz
macOS Binary (arm64) gINTomics_1.0.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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