TxDb.Mmusculus.UCSC.mm10.knownGene
Annotation package for TxDb object(s)
Bioconductor version: 3.23 · Package version: 3.10.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Bioconductor Core Team, Bioconductor Package Maintainer <maintainer@bioconductor.org> [cre] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Mus_musculus, TxDb |
| Package Short Url | https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/ |
Citation
From within R, enter citation("TxDb.Mmusculus.UCSC.mm10.knownGene"):
Bioconductor Core Team, Bioconductor Package Maintainer. TxDb.Mmusculus.UCSC.mm10.knownGene: Annotation package for TxDb object(s). doi:10.18129/B9.bioc.TxDb.Mmusculus.UCSC.mm10.knownGene, R package version 3.10.0, https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | TxDb.Mmusculus.UCSC.mm10.knownGene_3.10.0.tar.gz |
Reverse dependencies
Depends On Me (1): Mus.musculus
Imports Me (5): ChIPQC, crupR, fourSynergy, gINTomics, profileplyr
Suggests Me (24): annotatr, BSgenome, chipenrich.data, chipseqDB, cinaR, CRISPRseek, csaw, DegCre, enhancerHomologSearch, EpiCompare, epiRomics, epivizrData, GenomicFeatures, GenomicRanges, GRaNIE, InPAS, karyoploteR, linkSet, monaLisa, multicrispr, NanoMethViz, NoRCE, spatzie, tidyCoverage