DOI: 10.18129/B9.bioc.ggtree    

an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

Bioconductor version: Release (3.6)

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees with their covariates and other associated data.

Author: Guangchuang Yu [aut, cre, cph], Tommy Tsan-Yuk Lam [aut, ths], Justin Silverman [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at>

Citation (from within R, enter citation("ggtree")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script 00 ggtree introduction
HTML R Script 01 Tree Data Import
HTML R Script 02 Tree Visualization
HTML R Script 03 Tree Manipulation
HTML R Script 04 Tree Annotation
HTML R Script 05 Advance Tree Annotation
HTML R Script 06 ggtree utilities
PDF   Reference Manual
Text   NEWS


biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
Version 1.10.5
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License Artistic-2.0
Depends R (>= 3.3.2), ggplot2 (>= 2.2.0), treeio
Imports ape, grDevices, grid, magrittr, methods, rvcheck, scales, tidyr, utils
Suggests Biostrings, colorspace, EBImage, emojifont, knitr, prettydoc, rmarkdown, testthat
Depends On Me
Imports Me LINC, LymphoSeq, philr
Suggests Me treeio
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package ggtree_1.10.5.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ggtree_1.10.5.tgz
Source Repository git clone
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Old Source Packages for BioC 3.6 Source Archive

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