shiny.gosling

This is the released version of shiny.gosling; for the devel version, see shiny.gosling.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

Bioconductor version: Release (3.23)

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization. http://gosling-lang.org/. This R package is based on gosling.js. It uses R functions to create gosling plots that could be embedded onto R Shiny apps.

Author: Appsilon [aut, cre], Anirban Shaw [aut] ORCID: 0000-0003-4021-513X , Federico Rivadeneira [aut] ORCID: 0000-0001-7818-1225 , Vedha Viyash [aut]

Maintainer: Appsilon <opensource at appsilon.com>

Citation (from within R, enter citation("shiny.gosling")):

Appsilon, Anirban Shaw, Federico Rivadeneira, Vedha Viyash. shiny.gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny. doi:10.18129/B9.bioc.shiny.gosling, R package version 1.8.0, https://bioconductor.org/packages/shiny.gosling.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shiny.gosling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shiny.gosling")

2. Using a GRanges object in shiny.gosling	HTML	R Script
1. Introduction to shiny.gosling	HTML	R Script
4. Creating an Interactive Line Chart with shiny.gosling	HTML	R Script
5. Creating a Multi-Scale Sequence Track	HTML	R Script
3. Creating a Circos Plot with VCF Data	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Genetics, ShinyApps, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.19 (R-4.4) (2.5 years)
License	LGPL-3
Depends	R (>= 4.1.0)
Imports	htmltools, jsonlite, rlang, shiny, shiny.react, fs, digest, rjson
System Requirements
URL

Suggests	config, covr, knitr, lintr, mockery (>= 0.4.3), rcmdcheck, rmarkdown, sessioninfo, spelling, testthat (>= 3.0.0), GenomicRanges, VariantAnnotation, StructuralVariantAnnotation, biovizBase, ggbio
Linking To
Enhances
Depends On Me
Imports Me	gINTomics
Suggests Me	AlphaMissenseR
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shiny.gosling_1.8.0.tar.gz
Windows Binary (x86_64)	shiny.gosling_1.8.0.zip
macOS Binary (big-sur-x86_64)	shiny.gosling_1.8.0.tgz
macOS Binary (sonoma-arm64)	shiny.gosling_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/shiny.gosling
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/shiny.gosling
Package Short Url	https://bioconductor.org/packages/shiny.gosling/
Package Downloads Report	Download Stats