PharmacoGx

DOI: 10.18129/B9.bioc.PharmacoGx    

Analysis of Large-Scale Pharmacogenomic Data

Bioconductor version: Release (3.8)

Contains a set of functions to perform large-scale analysis of pharmacogenomic data.

Author: Petr Smirnov, Zhaleh Safikhani, Mark Freeman, Benjamin Haibe-Kains

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("PharmacoGx")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PharmacoGx", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PharmacoGx")

 

PDF R Script Creating a PharmacoSet object
PDF R Script PharmacoGx: an R package for analysis of large pharmacogenomic datasets
PDF   Reference Manual
Text   README

Details

biocViews Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Version 1.12.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License Artistic-2.0
Depends R (>= 3.4)
Imports Biobase, piano, magicaxis, RColorBrewer, parallel, caTools, methods, downloader, stats, utils, graphics, grDevices, lsa, reshape2
LinkingTo
Suggests xtable, testthat
SystemRequirements
Enhances
URL
BugReports https://github.com/bhklab/PharmacoGx/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PharmacoGx_1.12.0.tar.gz
Windows Binary PharmacoGx_1.12.0.zip
Mac OS X 10.11 (El Capitan) PharmacoGx_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PharmacoGx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PharmacoGx
Package Short Url http://bioconductor.org/packages/PharmacoGx/
Package Downloads Report Download Stats

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