DOI: 10.18129/B9.bioc.gDRimport  

Package for handling the import of dose-response data

Bioconductor version: Release (3.18)

The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

Author: Arkadiusz Gladki [aut, cre], Bartosz Czech [aut], Marc Hafner [aut], Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut], Janina Smola [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at>

Citation (from within R, enter citation("gDRimport")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet
HTML R Script Converting PharmacoSet Drug Response Data into gDR object
HTML R Script gDRimport
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils(>= 0.99.5), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx
Suggests BiocStyle, gDRtestData(>= 0.99.10), gDRstyle(>= 0.99.11), knitr, purrr, qs, testthat
Depends On Me gDR
Imports Me
Suggests Me gDRcore
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package gDRimport_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64) gDRimport_1.0.0.tgz
macOS Binary (arm64) gDRimport_1.0.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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