DOI: 10.18129/B9.bioc.gDRutils  

A package with helper functions for processing drug response data

Bioconductor version: Release (3.18)

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Aleksander Chlebowski [aut], Marc Hafner [aut], Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at>

Citation (from within R, enter citation("gDRutils")):


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biocViews Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, magrittr, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment
Suggests BiocManager, BiocStyle, futile.logger, gDRstyle(>= 0.99.15), gDRtestData(>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml
Depends On Me gDR
Imports Me gDRcore, gDRimport
Suggests Me
Links To Me
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Source Package gDRutils_1.0.0.tar.gz
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