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Bioconductor version: Release (3.18)
This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.
Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Aleksander Chlebowski [aut], Marc Hafner [aut], Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
Citation (from within R,
enter citation("gDRutils")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("gDRutils")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRutils")
HTML | R Script | gDRutils |
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.18 (R-4.3) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 4.2) |
Imports | BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, magrittr, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment |
LinkingTo | |
Suggests | BiocManager, BiocStyle, futile.logger, gDRstyle(>= 0.99.15), gDRtestData(>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | gDR |
Imports Me | gDRcore, gDRimport |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | gDRutils_1.0.0.tar.gz |
Windows Binary | gDRutils_1.0.0.zip (64-bit only) |
macOS Binary (x86_64) | gDRutils_1.0.0.tgz |
macOS Binary (arm64) | gDRutils_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gDRutils |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDRutils |
Bioc Package Browser | https://code.bioconductor.org/browse/gDRutils/ |
Package Short Url | https://bioconductor.org/packages/gDRutils/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.18 | Source Archive |
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