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gDRutils

A package with helper functions for processing drug response data


Bioconductor version: Release (3.18)

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Aleksander Chlebowski [aut], Marc Hafner [aut], Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRutils")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDRutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRutils")
gDRutils HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, magrittr, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment
System Requirements
URL
See More
Suggests BiocManager, BiocStyle, futile.logger, gDRstyle(>= 0.99.15), gDRtestData(>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml
Linking To
Enhances
Depends On Me gDR
Imports Me gDRcore, gDRimport
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gDRutils_1.0.0.tar.gz
Windows Binary gDRutils_1.0.0.zip
macOS Binary (x86_64) gDRutils_1.0.0.tgz
macOS Binary (arm64) gDRutils_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gDRutils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gDRutils
Bioc Package Browser https://code.bioconductor.org/browse/gDRutils/
Package Short Url https://bioconductor.org/packages/gDRutils/
Package Downloads Report Download Stats