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gDR

Umbrella package for R packages in the gDR suite


Bioconductor version: Release (3.18)

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Author: Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDR")
Running the drug response processing pipeline HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ShinyApps, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2), gDRcore(>= 0.99.12), gDRimport(>= 0.99.10), gDRutils(>= 0.99.13)
Imports
System Requirements
URL
See More
Suggests BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 0.99.11), gDRtestData(>= 0.99.11), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gDR_1.0.0.tar.gz
Windows Binary gDR_1.0.0.zip
macOS Binary (x86_64) gDR_1.0.0.tgz
macOS Binary (arm64) gDR_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gDR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gDR
Bioc Package Browser https://code.bioconductor.org/browse/gDR/
Package Short Url https://bioconductor.org/packages/gDR/
Package Downloads Report Download Stats