DOI: 10.18129/B9.bioc.genefilter  

This is the development version of genefilter; for the stable release version, see genefilter.

genefilter: methods for filtering genes from high-throughput experiments

Bioconductor version: Development (3.18)

Some basic functions for filtering genes.

Author: Robert Gentleman [aut], Vincent J. Carey [aut], Wolfgang Huber [aut], Florian Hahne [aut], Emmanuel Taiwo [ctb] ('howtogenefinder' vignette translation from Sweave to RMarkdown / HTML.), Khadijah Amusat [ctb] (Converted genefilter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF R Script 03 - Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010)
HTML R Script howtogenefinder.knit
HTML R Script Using the genefilter function to filter genes from a microarray
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biocViews Microarray, Software
Version 1.83.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18.5 years)
License Artistic-2.0
Imports MatrixGenerics(>= 1.11.1), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival, grDevices
Suggests class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer, BiocStyle, knitr
Depends On Me cellHTS2, CNTools, GeneMeta, Hiiragi2013, maEndToEnd, rnaseqGene, SISPA, sva
Imports Me a4Base, annmap, arrayQualityMetrics, Category, cbaf, ClassifyR, countsimQC, covRNA, DEXSeq, ENmix, FlowSorted.Blood.EPIC, GISPA, GSRI, IHWpaper, metaseqR2, methylCC, methylumi, minfi, MLInterfaces, mogsa, NBAMSeq, pcaExplorer, PECA, phenoTest, protGear, pwrEWAS, Ringo, RNAinteractMAPK, SGCP, spatialHeatmap, SpliceWiz, tilingArray, XDE, zinbwave
Suggests Me annotate, BioNet, BloodCancerMultiOmics2017, categoryCompare, clusterStab, codelink, cola, compcodeR, curatedBladderData, curatedCRCData, curatedOvarianData, DelayedArray, EnrichedHeatmap, factDesign, ffpe, ffpeExampleData, gageData, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, logicFS, lumi, MAQCsubset, MMUPHin, npGSEA, oligo, phyloseq, pvac, qpgraph, RforProteomics, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, simplifyEnrichment, Single.mTEC.Transcriptomes, TCGAbiolinks, topGO
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