BloodCancerMultiOmics2017
This is the development version of BloodCancerMultiOmics2017; for the stable release version, see BloodCancerMultiOmics2017.
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
Bioconductor version: Development (3.20)
The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber
Maintainer: Malgorzata Oles <dr.malgorzata.oles at gmail.com>
citation("BloodCancerMultiOmics2017")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BloodCancerMultiOmics2017")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BloodCancerMultiOmics2017")
BloodCancerMultiOmics2017 | HTML | R Script |
BloodCancerMultiOmics2017 - data overview | HTML | R Script |
Reference Manual |
Details
biocViews | CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch |
Version | 1.25.0 |
License | LGPL (>= 3) |
Depends | R (>= 3.5.0) |
Imports | beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble |
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Suggests | BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BloodCancerMultiOmics2017_1.25.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/BloodCancerMultiOmics2017 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BloodCancerMultiOmics2017 |
Package Short Url | https://bioconductor.org/packages/BloodCancerMultiOmics2017/ |
Package Downloads Report | Download Stats |