BloodCancerMultiOmics2017

DOI: 10.18129/B9.bioc.BloodCancerMultiOmics2017    

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

Bioconductor version: Release (3.7)

The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber

Maintainer: Malgorzata Oles <malgorzata.oles at embl.de>

Citation (from within R, enter citation("BloodCancerMultiOmics2017")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BloodCancerMultiOmics2017")

Documentation

HTML R Script BloodCancerMultiOmics2017
HTML R Script BloodCancerMultiOmics2017 - data overview
PDF   Reference Manual

Details

biocViews CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch
Version 1.0.0
License LGPL (>= 3)
Depends R (>= 3.5.0)
Imports beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, tidyverse, xtable
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BloodCancerMultiOmics2017_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/BloodCancerMultiOmics2017
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BloodCancerMultiOmics2017
Package Short Url http://bioconductor.org/packages/BloodCancerMultiOmics2017/
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