MLInterfaces

DOI: 10.18129/B9.bioc.MLInterfaces    

This is the development version of MLInterfaces; for the stable release version, see MLInterfaces.

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

Bioconductor version: Development (3.17)

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author: Vincent Carey [cre, aut] , Jess Mar [aut], Jason Vertrees [ctb], Laurent Gatto [ctb], Phylis Atieno [ctb] (Translated vignettes from Sweave to Rmarkdown / HTML.)

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("MLInterfaces")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MLInterfaces")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLInterfaces")

 

HTML R Script A machine learning tutorial tutorial: applications of the Bioconductor MLInterfaces package to gene expression data
HTML R Script MLInterfaces 2.0 -- a new design
PDF R Script MLInterfaces Computer Cluster
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Clustering, Software
Version 1.79.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 17.5 years)
License LGPL
Depends R (>= 3.5), Rcpp, methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster
Imports gdata, pls, sfsmisc, MASS, rpart, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats, magrittr, SummarizedExperiment
LinkingTo
Suggests class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party, klaR, BiocStyle, knitr, testthat
SystemRequirements
Enhances parallel
URL
Depends On Me pRoloc, SigCheck
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MLInterfaces_1.79.1.tar.gz
Windows Binary
macOS Binary (x86_64) MLInterfaces_1.79.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MLInterfaces
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MLInterfaces
Package Short Url https://bioconductor.org/packages/MLInterfaces/
Package Downloads Report Download Stats

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