gageData

This is the development version of gageData; for the stable release version, see gageData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7

Auxillary data for gage package

Bioconductor version: Development (3.24)

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo_weijun at yahoo.com>

Citation (from within R, enter citation("gageData")):

Weijun Luo. gageData: Auxillary data for gage package. doi:10.18129/B9.bioc.gageData, R package version 2.51.0, https://bioconductor.org/packages/gageData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("gageData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BreastCancerData, CancerData, ExperimentData, GEO, MicroarrayData, StemCell
Version	2.51.0
In Bioconductor since	BioC 2.7 (R-2.12) (16 years)
License	GPL (>=2.0)
Depends	R (>= 2.10)
Imports
System Requirements
URL

Suggests	gage, pathview, genefilter
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	gage
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gageData_2.51.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gageData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gageData
Package Short Url	https://bioconductor.org/packages/gageData/
Package Downloads Report	Download Stats