MatrixGenerics

This is the development version of MatrixGenerics; for the stable release version, see MatrixGenerics.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Bioconductor version: Development (3.24)

S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.

Author: Constantin Ahlmann-Eltze [aut] ORCID: 0000-0002-3762-068X , Peter Hickey [aut, cre] ORCID: 0000-0002-8153-6258 , Hervé Pagès [aut]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MatrixGenerics")):

Constantin Ahlmann-Eltze, Peter Hickey, Hervé Pagès. MatrixGenerics: S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects. doi:10.18129/B9.bioc.MatrixGenerics, R package version 1.25.0, https://bioconductor.org/packages/MatrixGenerics.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MatrixGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.25.0
In Bioconductor since	BioC 3.11 (R-4.0) (6.5 years)
License	Artistic-2.0
Depends	matrixStats (>= 1.4.1)
Imports	methods
System Requirements
URL	https://bioconductor.org/packages/MatrixGenerics
Bug Reports	https://github.com/Bioconductor/MatrixGenerics/issues

Suggests	Matrix, sparseMatrixStats, SparseArray, DelayedArray, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)
Linking To
Enhances
Depends On Me	DelayedArray, DelayedMatrixStats, GenomicFiles, SparseArray, sparseMatrixStats, SummarizedExperiment, VariantAnnotation
Imports Me	atena, Banksy, betterChromVAR, BiocDuckDB, blase, carnation, CoreGx, crisprDesign, CTexploreR, dbMatrix, DeconvoBuddies, demuxSNP, DESeq2, dreamlet, DuckDBArray, escape, FLAMES, FlowSorted.Blood.EPIC, gCrisprTools, genefilter, glmGamPoi, GSVA, imcRtools, lemur, lineagespot, methodical, mia, miaSim, miloR, MinimumDistance, MultiAssayExperiment, MultiAssaySpatialExperiment, muscat, omicsGMF, PDATK, plaid, RaggedExperiment, RAIDS, RCSL, SanityR, saseR, scater, scFeatures, SCIntRuler, scone, scPCA, scran, scuttle, Seqtometry, shinyMethyl, spatialLIBD, StabMap, tadar, TENxIO, tpSVG, transformGamPoi, universalmotif, VanillaICE, Voyager, zitools
Suggests Me	bnem, cypress, MoBPS, MungeSumstats
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MatrixGenerics_1.25.0.tar.gz
Windows Binary (x86_64)	MatrixGenerics_1.25.0.zip
macOS Binary (big-sur-x86_64)	MatrixGenerics_1.25.0.tgz
macOS Binary (sonoma-arm64)	MatrixGenerics_1.25.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MatrixGenerics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MatrixGenerics
Package Short Url	https://bioconductor.org/packages/MatrixGenerics/
Package Downloads Report	Download Stats