Welcome to the new bioconductor.org!


This is the development version of XDE; for the stable release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: Development (3.19)

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

XDE Vignette PDF R Script
XdeParameterClass Vignette PDF R Script
Reference Manual PDF


biocViews DifferentialExpression, Microarray, Software
Version 2.49.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5)
Imports BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
System Requirements
See More
Suggests MASS, RUnit
Linking To
Enhances coda
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XDE_2.49.0.tar.gz
Windows Binary XDE_2.49.0.zip
macOS Binary (x86_64) XDE_2.49.0.tgz
macOS Binary (arm64) XDE_2.49.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XDE
Bioc Package Browser https://code.bioconductor.org/browse/XDE/
Package Short Url https://bioconductor.org/packages/XDE/
Package Downloads Report Download Stats