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curatedBladderData

This is the development version of curatedBladderData; for the stable release version, see curatedBladderData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

Bladder Cancer Gene Expression Analysis

DOI: 10.18129/B9.bioc.curatedBladderData

Bioconductor version: Development (3.24)

Manually curated bladder cancer ExpressionSet objects from 10 studies (12 objects, since two studies contributed data on two platforms each), with uniformly processed expression data and curated clinical metadata. Datasets are hosted on Zenodo and downloaded on first use, then cached locally with BiocFileCache. Includes a configurable script for rule-based creation of filtered dataset lists for meta-analysis.

Author: Markus Riester

Maintainer: Markus Riester <markus.riester at gmail.com>

Citation (from within R, enter citation("curatedBladderData")):

Markus Riester. curatedBladderData: Bladder Cancer Gene Expression Analysis. doi:10.18129/B9.bioc.curatedBladderData, R package version 1.49.1, https://bioconductor.org/packages/curatedBladderData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("curatedBladderData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedBladderData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.