GenomicFiles
This is the development version of GenomicFiles; for the stable release version, see GenomicFiles.
All Bioconductor versions of GenomicFiles
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14
Distributed computing by file or by range
Bioconductor version: 3.24 · Package version: 1.49.0
This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
Author: Bioconductor Package Maintainer [aut, cre], Valerie Obenchain [aut], Michael Love [aut], Lori Shepherd [aut], Martin Morgan [aut], Sonali Kumari [ctb] (Converted 'GenomicFiles' vignettes from Sweave to RMarkdown / HTML.)
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation
From within R, enter citation("GenomicFiles"):
Bioconductor Package Maintainer, Valerie Obenchain, Michael Love, Lori Shepherd, Martin Morgan. GenomicFiles: Distributed computing by file or by range. doi:10.18129/B9.bioc.GenomicFiles, R package version 1.49.0, https://bioconductor.org/packages/GenomicFiles.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GenomicFiles")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.49.0 |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/GenomicFiles |
| Bug Reports | https://github.com/Bioconductor/GenomicFiles/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.14 (R-3.1) (12 years) |
| Downloads rank | 259 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/GenomicFiles/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicFiles")| Introduction to GenomicFiles | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicFiles_1.49.0.tar.gz |
| Windows binary (x86_64) | GenomicFiles_1.49.0.zip |
| macOS binary (arm64) | GenomicFiles_1.49.0.tgz |
| macOS binary (x86_64) | GenomicFiles_1.49.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicFiles |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicFiles |
| Package Downloads Report | Download Stats |
Dependencies
Depends: BiocGenerics, BiocParallel, GenomicRanges, MatrixGenerics, methods, Rsamtools (>= 2.25.1), rtracklayer (>= 1.69.1), SummarizedExperiment (>= 1.39.1)
Imports: BiocBaseUtils, GenomeInfoDb (>= 1.45.7), GenomicAlignments (>= 1.45.1), IRanges, S4Vectors, Seqinfo, VariantAnnotation (>= 1.55.1)
Suggests: BiocStyle, Biostrings, deepSNV, genefilter, Homo.sapiens, knitr, RNAseqData.HNRNPC.bam.chr14, RUnit, snpStats
Reverse dependencies
Depends On Me (1): IntEREst
Imports Me (7): CAGEfightR, derfinder, gDNAx, QuasR, Rqc, TFutils, VCFArray
Suggests Me (3): ldblock, MungeSumstats, S4Cartographer