Category

This is the development version of Category; for the stable release version, see Category.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Category Analysis

Bioconductor version: Development (3.24)

A collection of tools for performing category (gene set enrichment) analysis.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

Robert Gentleman. Category: Category Analysis. doi:10.18129/B9.bioc.Category, R package version 2.79.0, https://bioconductor.org/packages/Category.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Category")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

Using Categories to Analyze Microarray Data	PDF	R Script
Using Chromosome Bands as Categories	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	2.79.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	Artistic-2.0
Depends	methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports	utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI
System Requirements
URL

Suggests	EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGGREST, karyoploteR, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
Linking To
Enhances
Depends On Me	GOstats
Imports Me	categoryCompare, GmicR, meshr, miRLAB, phenoTest, ReportingTools, scTensor
Suggests Me	GSEAlm, maGUI, qpgraph, RnBeads
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Category_2.79.0.tar.gz
Windows Binary (x86_64)	Category_2.79.0.zip
macOS Binary (big-sur-x86_64)	Category_2.79.0.tgz
macOS Binary (sonoma-arm64)	Category_2.79.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Category
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Category
Package Short Url	https://bioconductor.org/packages/Category/
Package Downloads Report	Download Stats