FlowSorted.Blood.EPIC
This is the development version of FlowSorted.Blood.EPIC; for the stable release version, see FlowSorted.Blood.EPIC.
Illumina EPIC Data from Immunomagnetically Sorted Peripheral Blood Cells
Bioconductor version: Development (3.24)
Raw data objects to be used for blood cell proportion estimation in minfi and similar packages. The FlowSorted.Blood.EPIC object is based on samples assayed by Brock Christensen and colleagues; for details see Salas et al. 2018. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.
Author: Lucas A. Salas [aut, cre] 
, Devin C. Koestler [aut], Rondi A. Butler [ctb], Helen M. Hansen [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Brock C. Christensen [ctb], Kasper D. Hansen [ctb] (Contributor to the original minfi implementation), Jean-Philippe Fortin [ctb] (Contributor to the original minfi implementation), Shan V. Andrews [ctb] (Contributor to the original minfi implementation), E. Andres Houseman [ctb] (Author of the original constrained-projection method), Andrew E. Jaffe [ctb] (Contributor to the original minfi implementation)
Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>
citation("FlowSorted.Blood.EPIC")):Lucas A. Salas, Devin C. Koestler. FlowSorted.Blood.EPIC: Illumina EPIC Data from Immunomagnetically Sorted Peripheral Blood Cells. doi:10.18129/B9.bioc.FlowSorted.Blood.EPIC, R package version 2.17.2, https://bioconductor.org/packages/FlowSorted.Blood.EPIC.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("FlowSorted.Blood.EPIC")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSorted.Blood.EPIC")| FlowSorted.Blood.EPIC | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData |
| Version | 2.17.2 |
| In Bioconductor since | BioC 3.8 (R-3.5) (8 years) |
| License | GPL-3 |
| Depends | R (>= 4.6.0) |
| Imports | genefilter, quadprog, graphics, stats, utils, AnnotationHub, minfi (>= 1.21.2), ExperimentHub, SummarizedExperiment, S4Vectors, MatrixGenerics |
| System Requirements | |
| URL | https://github.com/immunomethylomics/FlowSorted.Blood.EPIC |
| Bug Reports | https://github.com/immunomethylomics/FlowSorted.Blood.EPIC/issues |
See More
| Suggests | knitr, rmarkdown, FlowSorted.Blood.450k (>= 1.0.1), EpiDISH, FlowSorted.CordBloodNorway.450k, testthat, IlluminaHumanMethylation450kmanifest (>= 0.2.0), IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19 |
| Linking To | |
| Enhances | FlowSorted.CordBloodCombined.450k (>= 1.11.5) |
| Depends On Me | |
| Imports Me | HiBED |
| Suggests Me | DMRcate, dnaEPICO, FlowSorted.CordBloodCombined.450k, wateRmelon |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FlowSorted.Blood.EPIC_2.17.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/FlowSorted.Blood.EPIC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FlowSorted.Blood.EPIC |
| Package Short Url | https://bioconductor.org/packages/FlowSorted.Blood.EPIC/ |
| Package Downloads Report | Download Stats |