GO.db

This is the released version of GO.db; for the devel version, see GO.db.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

A set of annotation maps describing the entire Gene Ontology

Bioconductor version: Release (3.23)

A set of annotation maps describing the entire Gene Ontology assembled using data from GO

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GO.db")):

Marc Carlson. GO.db: A set of annotation maps describing the entire Gene Ontology. doi:10.18129/B9.bioc.GO.db, R package version 3.23.1, https://bioconductor.org/packages/GO.db.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GO.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, FunctionalAnnotation
Version	3.23.1
In Bioconductor since	BioC 2.5 (R-2.10) or earlier (> 17 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, AnnotationDbi (>= 1.73.0)
Imports
System Requirements
URL

Suggests	DBI
Linking To
Enhances
Depends On Me	annaffy, BicARE, davidTiling, goProfiles, goTools, Homo.sapiens, Mus.musculus, Rattus.norvegicus, RnaSeqGeneEdgeRQL, SemDist, topGO
Imports Me	ADAM, ADAMgui, adSplit, bioCancer, BioNAR, clusterProfiler, CNEr, compEpiTools, consICA, EnrichmentBrowser, ExpHunterSuite, famat, gage, GeneTonic, GenomicInteractionNodes, GOfan, GOpro, GOSemSim, goseq, goSTAG, GOstats, goTools, ideal, MCbiclust, methylGSA, missMethyl, mosdef, NetSAM, netZooR, NoRCE, pcaExplorer, Pigengene, rGREAT, rgsepd, rrvgo, SGCP, signatureSearch, simplifyEnrichment, ViSEAGO
Suggests Me	annotate, AnnotationDbi, AnnotationForge, appreci8R, BaseSet, BiocSet, BioMartGOGeneSets, CALANGO, Category, categoryCompare, chipenrich.data, ChIPpeakAnno, clValid, conos, dmGsea, DSGEr, esetVis, fgga, FGNet, GlobalAncova, globaltest, goat, goSorensen, GSEABase, hpar, InteractiveComplexHeatmap, iSEEpathways, iSEEu, limma, maGUI, MetMashR, mgsa, MLP, msigdb, oppar, pagoda2, PathwayVote, phenoTest, pRoloc, randomGODB, RforProteomics, rols, RTopper, safe, sand, scde, simona, SomaScan.db, sparrow, SpliceWiz, systemPipeR, TFutils, yeastExpData
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GO.db_3.23.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url	https://bioconductor.org/packages/GO.db/
Package Downloads Report	Download Stats