Welcome to the new bioconductor.org!


Model-based gene set analysis

Bioconductor version: Release (3.18)

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

Author: Sebastian Bauer <mail at sebastianbauer.info>, Julien Gagneur <gagneur at genzentrum.lmu.de>

Maintainer: Sebastian Bauer <mail at sebastianbauer.info>

Citation (from within R, enter citation("mgsa")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Overview of the mgsa package. PDF R Script
Reference Manual PDF


biocViews GO, GeneSetEnrichment, Pathways, Software
Version 1.50.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License Artistic-2.0
Depends R (>= 2.14.0), methods, gplots
Imports graphics, stats, utils
System Requirements
URL https://github.com/sba1/mgsa-bioc
See More
Suggests DBI, RSQLite, GO.db, testthat
Linking To
Depends On Me
Imports Me
Suggests Me pareg
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mgsa_1.50.0.tar.gz
Windows Binary mgsa_1.50.0.zip
macOS Binary (x86_64) mgsa_1.50.0.tgz
macOS Binary (arm64) mgsa_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mgsa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mgsa
Bioc Package Browser https://code.bioconductor.org/browse/mgsa/
Package Short Url https://bioconductor.org/packages/mgsa/
Package Downloads Report Download Stats