SomaScan.db

DOI: 10.18129/B9.bioc.SomaScan.db  

Somalogic SomaScan Annotation Data

Bioconductor version: Release (3.18)

An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc. The annotations in this package were assembled using data from public repositories. For more information about the SomaScan assay and its data, please reference the 'SomaLogic/SomaLogic-Data' GitHub repository.

Author: Amanda Hiser [cre, aut] , SomaLogic Operating Co., Inc. [cph, fnd]

Maintainer: Amanda Hiser <ahiser at somalogic.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SomaScan.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SomaScan.db")

 

HTML	R Script	Advanced Exploration of the SomaScan Menu
HTML	R Script	Example ADAT Workflow Using SomaScan.db
HTML	R Script	Introduction to SomaScan.db
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	AnnotationData, ChipDb, Homo_sapiens
Version	0.99.7
License	MIT + file LICENSE
Depends	R (>= 4.3.0), AnnotationDbi(>= 1.56.2), methods
Imports	DBI, org.Hs.eg.db(>= 3.14.0)
LinkingTo
Suggests	annotate, BiocStyle, dplyr, GO.db, hgu95av2.db, KEGGREST, knitr, rmarkdown, SomaDataIO, testthat (>= 3.0.0), withr
SystemRequirements
Enhances
URL	https://somalogic.com https://github.com/SomaLogic/SomaScan.db/
BugReports	https://github.com/SomaLogic/SomaScan.db/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SomaScan.db_0.99.7.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/SomaScan.db/
Package Downloads Report	Download Stats